Follow the below mentioned steps to identify domains with private nameservers on your domain.

Step::1 Log into WHM as root.

Step::2 Go to DNS Functions.

Step::3 Click on Nameserver Record Point.

Step::4 Now here you will get all the feature reports information about nameservers used by zones on the server.

That's It !
Go through the video tutorial to get the procedure in detail. You can read the blog as well.
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